Fractional 13C enrichment of isolated carbons using [1-13C]- or [2-13C]-glucose facilitates the accurate measurement of dynamics at backbone Cα and side-chain methyl positions in proteins

被引:146
作者
Lundstrom, Patrik
Teilum, Kaare
Carstensen, Tommy
Bezsonova, Irina
Wiesner, Silke
Hansen, D. Flemming
Religa, Tomasz L.
Akke, Mikael
Kay, Lewis E.
机构
[1] Univ Toronto, Dept Med Genet & Chem, Toronto, ON M5S 1A8, Canada
[2] Univ Toronto, Dept Biochem, Toronto, ON M5S 1A8, Canada
[3] Lund Univ, Dept Biophys Chem, SE-22100 Lund, Sweden
[4] Univ Toronto, Dept Chem, Toronto, ON M5S 1A8, Canada
[5] Hosp Sick Children, Program Mol Struct & Funct, Toronto, ON M5G 1X8, Canada
[6] MRC, Ctr Prot Engn, Cambridge CB2 2QH, England
基金
加拿大健康研究院;
关键词
selective C-13 labeling; protein expression; 1-C-13]-glucose; 2-C-13]-glucose; C-13 relaxation measurements; CPMG relaxation dispersion; T1; rho;
D O I
10.1007/s10858-007-9158-6
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
A simple labeling approach is presented based on protein expression in [1-C-13]- or [2-C-13]-glucose containing media that produces molecules enriched at methyl carbon positions or backbone C-alpha sites, respectively. All of the methyl groups, with the exception of Thr and Ile(delta 1) are produced with isolated C-13 spins (i.e., no C-13-C-13 one bond couplings), facilitating studies of dynamics through the use of spin-spin relaxation experiments without artifacts introduced by evolution due to large homonuclear scalar couplings. Carbon-alpha sites are labeled without concomitant labeling at C-beta positions for 17 of the common 20 amino acids and there are no cases for which C-13(alpha)-(CO)-C-13 spin pairs are observed. A large number of probes are thus available for the study of protein dynamics with the results obtained complimenting those from more traditional backbone N-15 studies. The utility of the labeling is established by recording C-13 R-1 rho and CPMG-based experiments on a number of different protein systems.
引用
收藏
页码:199 / 212
页数:14
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