The structure of L-tyrosine 2,3-aminomutase from the C-1027 enediyne antitumor antibiotic biosynthetic pathway

被引:56
作者
Christianson, Carl V.
Montavon, Timothy J.
Van Lanen, Steven G.
Shen, Ben
Bruner, Steven D. [1 ]
机构
[1] Boston Coll, Dept Chem, Eugene F Merkert Chem Ctr, Chestnut Hill, MA 02467 USA
[2] Univ Wisconsin, Dept Chem, Madison, WI 53705 USA
[3] Univ Wisconsin, Natl Cooperat Drug Discovery Grp, Madison, WI 53705 USA
关键词
D O I
10.1021/bi7003685
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The SgcC4 L-tyrosine 2,3-aminomutase (SgTAM) catalyzes the formation of (S)-beta-tyrosine in the biosynthetic pathway of the enediyne antitumor antibiotic C-1027. SgTAM is homologous to the histidine ammonia lyase family of enzymes whose activity is dependent on the methylideneimidazole-5-one (MIO) cofactor. Unlike the lyase enzymes, SgTAM catalyzes additional chemical transformations resulting in an overall stereospecific 1,2-amino shift in the substrate L-tyrosine to generate (S)-beta-tyrosine. Previously, we provided kinetic, spectroscopic, and mutagenesis data supporting the presence of MIO in the active site of SgTAM [Christenson, S. D.; Wu, W.; Spies, A.; Shen, B.; and Toney, M. D. (2003) Biochemistry 42, 12708-12718]. Here we report the first X-ray crystal structure of an MIO-containing aminomutase, SgTAM, and confirm the structural homology of SgTAM to ammonia lyases. Comparison of the structure of SgTAM to the L-tyrosine ammonia lyase from Rhodobacter sphaeroides provides insight into the structural basis for aminomutase activity. The results show that SgTAM has a closed active site well suited to retain ammonia and minimize the formation of lyase elimination products. The amino acid determinants for substrate recognition and catalysis can be predicted from the structure, setting the framework for detailed mechanistic investigations.
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页码:7205 / 7214
页数:10
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共 36 条
[1]   The calicheamicin gene cluster and its iterative type I enediyne PKS [J].
Ahlert, J ;
Shepard, E ;
Lomovskaya, N ;
Zazopoulos, E ;
Staffa, A ;
Bachmann, BO ;
Huang, KX ;
Fonstein, L ;
Czisny, A ;
Whitwam, RE ;
Farnet, CM ;
Thorson, JS .
SCIENCE, 2002, 297 (5584) :1173-1176
[2]   Kinetic analysis of the inhibition of phenylalanine ammonia-lyase by 2-aminoindan-2-phosphonic acid and other phenylalanine analogues [J].
Appert, C ;
Zon, J ;
Amrhein, N .
PHYTOCHEMISTRY, 2003, 62 (03) :415-422
[3]   Structures of two histidine ammonia-lyase modifications and implications for the catalytic mechanism [J].
Baedeker, M ;
Schulz, GE .
EUROPEAN JOURNAL OF BIOCHEMISTRY, 2002, 269 (06) :1790-1797
[4]   Autocatalytic peptide cyclization during chain folding of histidine ammonia-lyase [J].
Baedeker, M ;
Schulz, GE .
STRUCTURE, 2002, 10 (01) :61-67
[5]   THE CCP4 SUITE - PROGRAMS FOR PROTEIN CRYSTALLOGRAPHY [J].
BAILEY, S .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1994, 50 :760-763
[6]   Understanding GFP chromophore biosynthesis: Controlling backbone cyclization and modifying post-translational chemistry [J].
Barondeau, DP ;
Kassmann, CJ ;
Tainer, JA ;
Getzoff, ED .
BIOCHEMISTRY, 2005, 44 (06) :1960-1970
[7]   Locking mechanism preventing radical damage in the absence of substrate,, as revealed by the x-ray structure of lysine 5,6-aminomutase [J].
Berkovitch, F ;
Behshad, E ;
Tang, KH ;
Enns, EA ;
Frey, PA ;
Drennan, CL .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2004, 101 (45) :15870-15875
[8]   Crystallography & NMR system:: A new software suite for macromolecular structure determination [J].
Brunger, AT ;
Adams, PD ;
Clore, GM ;
DeLano, WL ;
Gros, P ;
Grosse-Kunstleve, RW ;
Jiang, JS ;
Kuszewski, J ;
Nilges, M ;
Pannu, NS ;
Read, RJ ;
Rice, LM ;
Simonson, T ;
Warren, GL .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1998, 54 :905-921
[9]   Crystal structure of phenylalanine ammonia lyase: Multiple helix dipoles implicated in catalysis [J].
Calabrese, JC ;
Jordan, DB ;
Boodhoo, A ;
Sariaslani, S ;
Vannelli, T .
BIOCHEMISTRY, 2004, 43 (36) :11403-11416
[10]   β-peptides:: From structure to function [J].
Cheng, RP ;
Gellman, SH ;
DeGrado, WF .
CHEMICAL REVIEWS, 2001, 101 (10) :3219-3232