MOsDB: an integrated information resource for rice genomics

被引：20

作者：

Karlowski, WM ^{[1
]}

Schoof, H ^{[1
]}

Janakiraman, V ^{[1
]}

Stuempflen, V ^{[1
]}

Mayer, KFX ^{[1
]}

机构：

[1] GSF, Natl Res Ctr Environm & Hlth, Inst Bioinformat, MIPS, D-85764 Neuherberg, Germany

来源：

NUCLEIC ACIDS RESEARCH | 2003年 / 31卷 / 01期

关键词：

D O I：

10.1093/nar/gkg073

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

The MIPS Rice (Oryza sativa) database (MOsDB; http://mips.gsf.de/proj/rice) provides a comprehensive data collection dedicated to the genome information of rice. Rice (O. sativa L.) is one of the most important food crops for over half the world's population and serves as a major model system in cereal genome research. MOsDB integrates data from two publicly available rice genomic sequences, O. sativa L. ssp. indica and O. sativa L. ssp. japonica. Besides regularly updated rice genome sequence information, MOsDB provides an integrated resource for associated analysis data, e. g. internal and external annotation information as well as a complex characterization of all annotated rice genes. The MOsDB web interface supports various search options and allows browsing the database content. MOsDB is continuously expanding to include an increasing range of data type and the growing amount of information on the rice genome.

引用

页码：190 / 192

页数：3

共 16 条

[1]

Ashburner M, 2001, GENOME RES, V11, P1425

[2] The PEDANT genome database [J].

Frishman, D ;

Mokrejs, M ;

Kosykh, D ;

Kastenmüller, G ;

Kolesov, G ;

Zubrzycki, I ;

Gruber, C ;

Geier, B ;

Kaps, A ;

Albermann, K ;

Volz, A ;

Wagner, C ;

Fellenberg, M ;

Heumann, K ;

Mewes, HW .

NUCLEIC ACIDS RESEARCH, 2003, 31 (01) :207-211

[3] Functional and structural genomics using PEDANT [J].

Frishman, D ;

Albermann, K ;

Hani, J ;

Heumann, K ;

Metanomski, A ;

Zollner, A ;

Mewes, HW .

BIOINFORMATICS, 2001, 17 (01) :44-57

[4] A draft sequence of the rice genome (Oryza sativa L. ssp japonica) [J].

Goff, SA ;

Ricke, D ;

Lan, TH ;

Presting, G ;

Wang, RL ;

Dunn, M ;

Glazebrook, J ;

Sessions, A ;

Oeller, P ;

Varma, H ;

Hadley, D ;

Hutchinson, D ;

Martin, C ;

Katagiri, F ;

Lange, BM ;

Moughamer, T ;

Xia, Y ;

Budworth, P ;

Zhong, JP ;

Miguel, T ;

Paszkowski, U ;

Zhang, SP ;

Colbert, M ;

Sun, WL ;

Chen, LL ;

Cooper, B ;

Park, S ;

Wood, TC ;

Mao, L ;

Quail, P ;

Wing, R ;

Dean, R ;

Yu, YS ;

Zharkikh, A ;

Shen, R ;

Sahasrabudhe, S ;

Thomas, A ;

Cannings, R ;

Gutin, A ;

Pruss, D ;

Reid, J ;

Tavtigian, S ;

Mitchell, J ;

Eldredge, G ;

Scholl, T ;

Miller, RM ;

Bhatnagar, S ;

Adey, N ;

Rubano, T ;

Tusneem, N .

SCIENCE, 2002, 296 (5565) :92-100

[5] The Ensembl genome database project [J].

Hubbard, T ;

Barker, D ;

Birney, E ;

Cameron, G ;

Chen, Y ;

Clark, L ;

Cox, T ;

Cuff, J ;

Curwen, V ;

Down, T ;

Durbin, R ;

Eyras, E ;

Gilbert, J ;

Hammond, M ;

Huminiecki, L ;

Kasprzyk, A ;

Lehvaslaiho, H ;

Lijnzaad, P ;

Melsopp, C ;

Mongin, E ;

Pettett, R ;

Pocock, M ;

Potter, S ;

Rust, A ;

Schmidt, E ;

Searle, S ;

Slater, G ;

Smith, J ;

Spooner, W ;

Stabenau, A ;

Stalker, J ;

Stupka, E ;

Ureta-Vidal, A ;

Vastrik, I ;

Clamp, M .

NUCLEIC ACIDS RESEARCH, 2002, 30 (01) :38-41

[6] Analysis of the genome sequence of the flowering plant Arabidopsis thaliana [J].

Kaul, S ;

Koo, HL ;

Jenkins, J ;

Rizzo, M ;

Rooney, T ;

Tallon, LJ ;

Feldblyum, T ;

Nierman, W ;

Benito, MI ;

Lin, XY ;

Town, CD ;

Venter, JC ;

Fraser, CM ;

Tabata, S ;

Nakamura, Y ;

Kaneko, T ;

Sato, S ;

Asamizu, E ;

Kato, T ;

Kotani, H ;

Sasamoto, S ;

Ecker, JR ;

Theologis, A ;

Federspiel, NA ;

Palm, CJ ;

Osborne, BI ;

Shinn, P ;

Conway, AB ;

Vysotskaia, VS ;

Dewar, K ;

Conn, L ;

Lenz, CA ;

Kim, CJ ;

Hansen, NF ;

Liu, SX ;

Buehler, E ;

Altafi, H ;

Sakano, H ;

Dunn, P ;

Lam, B ;

Pham, PK ;

Chao, Q ;

Nguyen, M ;

Yu, GX ;

Chen, HM ;

Southwick, A ;

Lee, JM ;

Miranda, M ;

Toriumi, MJ ;

Davis, RW .

NATURE, 2000, 408 (6814) :796-815

[7] CEREAL GENOME EVOLUTION - GRASSES, LINE UP AND FORM A CIRCLE [J].

MOORE, G ;

DEVOS, KM ;

WANG, Z ;

GALE, MD .

CURRENT BIOLOGY, 1995, 5 (07) :737-739

[8] Exon discovery by genomic sequence alignment [J].

Morgenstern, B ;

Rinner, O ;

Abbeddaïm, S ;

Haase, D ;

Mayer, KFX ;

Dress, AWM ;

Mewes, HW .

BIOINFORMATICS, 2002, 18 (06) :777-787

[9] Sputnik: a database platform for comparative plant genomics [J].

Rudd, S ;

Mewes, HW ;

Mayer, KFX .

NUCLEIC ACIDS RESEARCH, 2003, 31 (01) :128-132

[10] Ab initio gene finding in Drosophila genomic DNA [J].

Salamov, AA ;

Solovyev, VV .

GENOME RESEARCH, 2000, 10 (04) :516-522

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