Biocuration of functional annotation at the European nucleotide archive

被引：23

作者：

Gibson, Richard ^{[1
]}

Alako, Blaise ^{[1
]}

Amid, Clara ^{[1
]}

Cerdeno-Tarraga, Ana ^{[1
]}

Cleland, Iain ^{[1
]}

Goodgame, Neil ^{[1
]}

ten Hoopen, Petra ^{[1
]}

Jayathilaka, Suran ^{[1
]}

Kay, Simon ^{[1
]}

Leinonen, Rasko ^{[1
]}

Liu, Xin ^{[1
]}

Pallreddy, Swapna ^{[1
]}

Pakseresht, Nima ^{[1
]}

Rajan, Jeena ^{[1
]}

Rossello, Marc ^{[1
]}

Silvester, Nicole ^{[1
]}

Smirnov, Dmitriy ^{[1
]}

Toribio, Ana Luisa ^{[1
]}

Vaughan, Daniel ^{[1
]}

Zalunin, Vadim ^{[1
]}

Cochrane, Guy ^{[1
]}

机构：

[1] European Bioinformat Inst EMBL EBI, European Mol Biol Lab, Wellcome Genome Campus, Cambridge CB10 1SD, England

来源：

NUCLEIC ACIDS RESEARCH | 2016年 / 44卷 / D1期

基金：

英国生物技术与生命科学研究理事会;

关键词：

DATABASE;

D O I：

10.1093/nar/gkv1311

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

The European Nucleotide Archive (ENA; http://www.ebi.ac.uk/ena) is a repository for the submission, maintenance and presentation of nucleotide sequence data and related sample and experimental information. In this article we report on ENA in 2015 regarding general activity, notable published data sets and major achievements. This is followed by a focus on sustainable biocuration of functional annotation, an area which has particularly felt the pressure of sequencing growth. The importance of functional annotation, how it can be submitted and the shifting role of the biocurator in the context of increasing volumes of data are all discussed.

引用

页码：D58 / D66

页数：9

共 13 条

[1] GenBank [J].

Benson, Dennis A. ;

Clark, Karen ;

Karsch-Mizrachi, Ilene ;

Lipman, David J. ;

Ostell, James ;

Sayers, Eric W. .

NUCLEIC ACIDS RESEARCH, 2015, 43 (D1) :D30-D35

[2] Tara Oceans studies plankton at PLANETARY SCALE [J].

Bork, P. ;

Bowler, C. ;

de Vargas, C. ;

Gorsky, G. ;

Karsenti, E. ;

Wincker, P. .

SCIENCE, 2015, 348 (6237) :873-873

[3] Accumulation of Human-Adapting Mutations during Circulation of A(H1N1)pdm09 Influenza Virus in Humans in the United Kingdom [J].

Elderfield, Ruth A. ;

Watson, Simon J. ;

Godlee, Alexandra ;

Adamson, Walt E. ;

Thompson, Catherine I. ;

Dunning, Jake ;

Fernandez-Alonso, Mirian ;

Blumenkrantz, Deena ;

Hussell, Tracy ;

Zambon, Maria ;

Openshaw, Peter ;

Kellam, Paul ;

Barclay, Wendy S. .

JOURNAL OF VIROLOGY, 2014, 88 (22) :13269-13283

[4] Type material in the NCBI Taxonomy Database [J].

Federhen, Scott .

NUCLEIC ACIDS RESEARCH, 2015, 43 (D1) :D1086-D1098

[5] An early modern human from Romania with a recent Neanderthal ancestor [J].

Fu, Qiaomei ;

Hajdinjak, Mateja ;

Moldovan, Oana Teodora ;

Constantin, Silviu ;

Mallick, Swapan ;

Skoglund, Pontus ;

Patterson, Nick ;

Rohland, Nadin ;

Lazaridis, Iosif ;

Nickel, Birgit ;

Viola, Bence ;

Pruefer, Kay ;

Meyer, Matthias ;

Kelso, Janet ;

Reich, David ;

Paeaebo, Svante .

NATURE, 2015, 524 (7564) :216-+

[6] Molecular DNA identity of the mouflon of Cyprus (Ovis orientalis ophion, Bovidae): Near Eastern origin and divergence from Western Mediterranean conspecific populations [J].

Guerrini, Monica ;

Forcina, Giovanni ;

Panayides, Panicos ;

Lorenzini, Rita ;

Garel, Mathieu ;

Anayiotos, Petros ;

Kassinis, Nikolaos ;

Barbanera, Filippo .

SYSTEMATICS AND BIODIVERSITY, 2015, 13 (05) :472-483

[7] Ancient genomes link early farmers from Atapuerca in Spain to modern-day Basques [J].

Gunther, Torsten ;

Valdiosera, Cristina ;

Malmstrom, Helena ;

Urena, Irene ;

Rodriguez-Varela, Ricardo ;

Sverrisdottir, Oddny Osk ;

Daskalaki, Evangelia A. ;

Skoglund, Pontus ;

Naidoo, Thijessen ;

Svensson, Emma M. ;

Maria Bermudez de Castro, Jose ;

Carbonell, Eudald ;

Dunn, Michael ;

Stora, Jan ;

Iriarte, Eneko ;

Arsuaga, Juan Luis ;

Carretero, Jose-Miguel ;

Gotherstrom, Anders ;

Jakobsson, Mattias .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2015, 112 (38) :11917-11922

[8] The DDBJ Japanese Genotype-phenotype Archive for genetic and phenotypic human data [J].

Kodama, Yuichi ;

Mashima, Jun ;

Kosuge, Takehide ;

Katayama, Toshiaki ;

Fujisawa, Takatomo ;

Kaminuma, Eli ;

Ogasawara, Osamu ;

Okubo, Kousaku ;

Takagi, Toshihisa ;

Nakamura, Yasukazu .

NUCLEIC ACIDS RESEARCH, 2015, 43 (D1) :D18-D22

[9] Kiwi genome provides insights into evolution of a nocturnal lifestyle [J].

Le Duc, Diana ;

Renaud, Gabriel ;

Krishnan, Arunkumar ;

Almen, Markus Sallman ;

Huynen, Leon ;

Prohaska, Sonja J. ;

Ongyerth, Matthias ;

Bitarello, Barbara D. ;

Schioth, Helgi B. ;

Hofreiter, Michael ;

Stadler, Peter F. ;

Pruefer, Kay ;

Lambert, David ;

Kelso, Janet ;

Schoeneberg, Torsten .

GENOME BIOLOGY, 2015, 16

[10] The International Nucleotide Sequence Database Collaboration [J].

Nakamura, Yasukazu ;

Cochrane, Guy ;

Karsch-Mizrachi, Ilene .

NUCLEIC ACIDS RESEARCH, 2013, 41 (D1) :D21-D24

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