Functions and Regulation of RNA Editing by ADAR Deaminases

被引:940
作者
Nishikura, Kazuko [1 ]
机构
[1] Wistar Inst Anat & Biol, Dept Gene Express & Regulat, Philadelphia, PA 19104 USA
来源
ANNUAL REVIEW OF BIOCHEMISTRY, VOL 79 | 2010年 / 79卷
关键词
double-stranded RNA; A -> I RNA editing; noncoding RNA; RNA interference; microRNA; esiRNA; DOUBLE-STRANDED-RNA; PRE-MESSENGER-RNA; DNA BINDING DOMAIN; I-EDITED RNAS; ADENOSINE-DEAMINASE; GENE-EXPRESSION; GLUR-B; UNWINDING ACTIVITY; MAMMALIAN-CELLS; ENZYME ADAR1;
D O I
10.1146/annurev-biochem-060208-105251
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
One type of RNA editing converts adenosines to inosines (A -> I editing) in double-stranded RNA (dsRNA) substrates. A -> I RNA editing is mediated by adenosine deaminase acting on RNA (ADAR) enzymes. A -> I RNA editing of protein-coding sequences of a limited number of mammalian genes results in recoding and subsequent alterations of their functions. However, A -> I RNA editing most frequently targets repetitive RNA sequences located within introns and 5' and 3' untranslated regions (UTRs). Although the biological significance of noncoding RNA editing remains largely unknown, several possibilities, including its role in the control of endogenous short interfering RNAs (esiRNAs), have been proposed. Furthermore, recent studies have revealed that the biogenesis and functions of certain microRNAs (miRNAs) are regulated by the editing of their precursors. Here, I review the recent findings that indicate new functions for A -> I editing in the regulation of noncoding RNAs and for interactions between RNA editing and RNA interference mechanisms.
引用
收藏
页码:321 / 349
页数:29
相关论文
共 155 条
[51]   Dysregulated Editing of Serotonin 2C Receptor mRNAs Results in Energy Dissipation and Loss of Fat Mass [J].
Kawahara, Yukio ;
Grimberg, Adda ;
Teegarden, Sarah ;
Mombereau, Cedric ;
Liu, Sui ;
Bale, Tracy L. ;
Blendy, Julie A. ;
Nishikura, Kazuko .
JOURNAL OF NEUROSCIENCE, 2008, 28 (48) :12834-12844
[52]   Frequency and fate of microRNA editing in human brain [J].
Kawahara, Yukio ;
Megraw, Molly ;
Kreider, Edward ;
Iizasa, Hisashi ;
Valente, Louis ;
Hatzigeorgiou, Artemis G. ;
Nishikura, Kazuko .
NUCLEIC ACIDS RESEARCH, 2008, 36 (16) :5270-5280
[53]   RNA editing of the microRNA-151 precursor blocks cleavage by the Dicer-TRBP complex [J].
Kawahara, Yukio ;
Zinshteyn, Boris ;
Chendrimada, Thimmaiah P. ;
Shiekhattar, Ramin ;
Nishikura, Kazuko .
EMBO REPORTS, 2007, 8 (08) :763-769
[54]   Redirection of silencing targets by adenosine-to-inosine editing of miRNAs [J].
Kawahara, Yukio ;
Zinshteyn, Boris ;
Sethupathy, Praveen ;
Iizasa, Hisashi ;
Hatzigeorgiou, Artemis G. ;
Nishikura, Kazuko .
SCIENCE, 2007, 315 (5815) :1137-1140
[55]   Human RNA-specific adenosine deaminase (ADAR1) gene specifies transcripts that initiate from a constitutively active alternative promoter [J].
Kawakubo, K ;
Samuel, CE .
GENE, 2000, 258 (1-2) :165-172
[56]   Drosophila endogenous small RNAs bind to Argonaute 2 in somatic cells [J].
Kawamura, Yoshinori ;
Saito, Kuniaki ;
Kin, Taishin ;
Ono, Yukiteru ;
Asai, Kiyoshi ;
Sunohara, Takafumi ;
Okada, Tomoko N. ;
Siomi, Mikiko C. ;
Siomi, Haruhiko .
NATURE, 2008, 453 (7196) :793-U5
[57]   Tuning of RNA editing by ADAR is required in Drosophila [J].
Keegan, LP ;
Brindle, J ;
Gallo, A ;
Leroy, A ;
Reenan, RA ;
O'Connell, MA .
EMBO JOURNAL, 2005, 24 (12) :2183-2193
[58]   The many roles of an RNA editor [J].
Keegan, LP ;
Gallo, A ;
O'Connell, MA .
NATURE REVIEWS GENETICS, 2001, 2 (11) :869-878
[59]   Widespread RNA editing of embedded Alu elements in the human transcriptome [J].
Kim, DDY ;
Kim, TTY ;
Walsh, T ;
Kobayashi, Y ;
Matise, TC ;
Buyske, S ;
Gabriel, A .
GENOME RESEARCH, 2004, 14 (09) :1719-1725
[60]  
KIM U, 1994, J BIOL CHEM, V269, P13480