共 15 条
PeptideClassifier for protein inference and targeted quantitative proteomics
被引:72
作者:

论文数: 引用数:
h-index:
机构:

Ahrens, Christian H.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Zurich, Inst Mol Life Sci, CH-8057 Zurich, Switzerland Univ Zurich, Inst Mol Life Sci, CH-8057 Zurich, Switzerland
机构:
[1] Univ Zurich, Inst Mol Life Sci, CH-8057 Zurich, Switzerland
关键词:
TANDEM MASS-SPECTROMETRY;
DROSOPHILA-MELANOGASTER;
IDENTIFICATIONS;
SENSITIVITY;
CATALOG;
PEPTIDE;
YEAST;
D O I:
10.1038/nbt0710-647
中图分类号:
Q81 [生物工程学(生物技术)];
Q93 [微生物学];
学科分类号:
071005 ;
0836 ;
090102 ;
100705 ;
摘要:
引用
收藏
页码:647 / 650
页数:4
相关论文
共 15 条
[1]
A Proteome Catalog of Drosophila melanogaster -: An essential resource for targeted quantitative proteomics
[J].
Ahrens, Christian H.
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Brunner, Erich
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Hafen, Ernst
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Aebersold, Ruedi
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Basler, Konrad
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FLY,
2007, 1 (03)
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Ahrens, Christian H.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Zurich, Ctr Model Organism Proteomes, CH-8057 Zurich, Switzerland
Univ Zurich, Swiss Fed Inst Technol, Funct Genom Ctr, CH-8057 Zurich, Switzerland Univ Zurich, Ctr Model Organism Proteomes, CH-8057 Zurich, Switzerland

Brunner, Erich
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Zurich, Ctr Model Organism Proteomes, CH-8057 Zurich, Switzerland
Univ Zurich, Inst Mol Biol, CH-8057 Zurich, Switzerland Univ Zurich, Ctr Model Organism Proteomes, CH-8057 Zurich, Switzerland

Hafen, Ernst
论文数: 0 引用数: 0
h-index: 0
机构:
Inst Mol Syst Biol, Zurich, Switzerland Univ Zurich, Ctr Model Organism Proteomes, CH-8057 Zurich, Switzerland

论文数: 引用数:
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机构:

Basler, Konrad
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Zurich, Ctr Model Organism Proteomes, CH-8057 Zurich, Switzerland
Univ Zurich, Inst Mol Biol, CH-8057 Zurich, Switzerland Univ Zurich, Ctr Model Organism Proteomes, CH-8057 Zurich, Switzerland
[2]
A Human Proteome Detection and Quantitation Project
[J].
Anderson, N. Leigh
;
Anderson, Norman G.
;
Pearson, Terry W.
;
Borchers, Christoph H.
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Paulovich, Amanda G.
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Patterson, Scott D.
;
Gillette, Michael
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Aebersold, Ruedi
;
Carr, Steven A.
.
MOLECULAR & CELLULAR PROTEOMICS,
2009, 8 (05)
:883-886

Anderson, N. Leigh
论文数: 0 引用数: 0
h-index: 0
机构:
Plasma Proteome Inst, Washington, DC 20009 USA Plasma Proteome Inst, Washington, DC 20009 USA

Anderson, Norman G.
论文数: 0 引用数: 0
h-index: 0
机构:
Plasma Proteome Inst, Washington, DC 20009 USA Plasma Proteome Inst, Washington, DC 20009 USA

Pearson, Terry W.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Victoria, Dept Biochem & Microbiol, Victoria, BC V8W 3P6, Canada Plasma Proteome Inst, Washington, DC 20009 USA

Borchers, Christoph H.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Victoria, Genome BC Prote Ctr, Victoria, BC V8Z 7X8, Canada Plasma Proteome Inst, Washington, DC 20009 USA

Paulovich, Amanda G.
论文数: 0 引用数: 0
h-index: 0
机构:
Fred Hutchinson Canc Res Ctr, Seattle, WA 98109 USA Plasma Proteome Inst, Washington, DC 20009 USA

Patterson, Scott D.
论文数: 0 引用数: 0
h-index: 0
机构:
Amgen Inc, Newbury Pk, CA 91320 USA Plasma Proteome Inst, Washington, DC 20009 USA

论文数: 引用数:
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机构:

Aebersold, Ruedi
论文数: 0 引用数: 0
h-index: 0
机构:
Inst Mol Syst Biol, CH-8093 Zurich, Switzerland Plasma Proteome Inst, Washington, DC 20009 USA

Carr, Steven A.
论文数: 0 引用数: 0
h-index: 0
机构:
MIT, Broad Inst, Cambridge, MA 02142 USA
Harvard Univ, Cambridge, MA 02142 USA Plasma Proteome Inst, Washington, DC 20009 USA
[3]
A high-quality catalog of the Drosophila melanogaster proteome
[J].
Brunner, Erich
;
Ahrens, Christian H.
;
Mohanty, Sonali
;
Baetschmann, Hansruedi
;
Loevenich, Sandra
;
Potthast, Frank
;
Deutsch, Eric W.
;
Panse, Christian
;
de Lichtenberg, Ulrik
;
Rinner, Oliver
;
Lee, Hookeun
;
Pedrioli, Patrick G. A.
;
Malmstrom, Johan
;
Koehler, Katja
;
Schrimpf, Sabine
;
Krijgsveld, Jeroen
;
Kregenow, Floyd
;
Heck, Albert J. R.
;
Hafen, Ernst
;
Schlapbach, Ralph
;
Aebersold, Ruedi
.
NATURE BIOTECHNOLOGY,
2007, 25 (05)
:576-583

Brunner, Erich
论文数: 0 引用数: 0
h-index: 0
机构: ETH Honggerberg, Inst Mol Syst Biol, Swiss Fed Inst Technol, CH-8093 Zurich, Switzerland

Ahrens, Christian H.
论文数: 0 引用数: 0
h-index: 0
机构: ETH Honggerberg, Inst Mol Syst Biol, Swiss Fed Inst Technol, CH-8093 Zurich, Switzerland

Mohanty, Sonali
论文数: 0 引用数: 0
h-index: 0
机构: ETH Honggerberg, Inst Mol Syst Biol, Swiss Fed Inst Technol, CH-8093 Zurich, Switzerland

Baetschmann, Hansruedi
论文数: 0 引用数: 0
h-index: 0
机构: ETH Honggerberg, Inst Mol Syst Biol, Swiss Fed Inst Technol, CH-8093 Zurich, Switzerland

Loevenich, Sandra
论文数: 0 引用数: 0
h-index: 0
机构: ETH Honggerberg, Inst Mol Syst Biol, Swiss Fed Inst Technol, CH-8093 Zurich, Switzerland

Potthast, Frank
论文数: 0 引用数: 0
h-index: 0
机构: ETH Honggerberg, Inst Mol Syst Biol, Swiss Fed Inst Technol, CH-8093 Zurich, Switzerland

Deutsch, Eric W.
论文数: 0 引用数: 0
h-index: 0
机构: ETH Honggerberg, Inst Mol Syst Biol, Swiss Fed Inst Technol, CH-8093 Zurich, Switzerland

Panse, Christian
论文数: 0 引用数: 0
h-index: 0
机构: ETH Honggerberg, Inst Mol Syst Biol, Swiss Fed Inst Technol, CH-8093 Zurich, Switzerland

de Lichtenberg, Ulrik
论文数: 0 引用数: 0
h-index: 0
机构: ETH Honggerberg, Inst Mol Syst Biol, Swiss Fed Inst Technol, CH-8093 Zurich, Switzerland

Rinner, Oliver
论文数: 0 引用数: 0
h-index: 0
机构: ETH Honggerberg, Inst Mol Syst Biol, Swiss Fed Inst Technol, CH-8093 Zurich, Switzerland

Lee, Hookeun
论文数: 0 引用数: 0
h-index: 0
机构: ETH Honggerberg, Inst Mol Syst Biol, Swiss Fed Inst Technol, CH-8093 Zurich, Switzerland

Pedrioli, Patrick G. A.
论文数: 0 引用数: 0
h-index: 0
机构: ETH Honggerberg, Inst Mol Syst Biol, Swiss Fed Inst Technol, CH-8093 Zurich, Switzerland

Malmstrom, Johan
论文数: 0 引用数: 0
h-index: 0
机构: ETH Honggerberg, Inst Mol Syst Biol, Swiss Fed Inst Technol, CH-8093 Zurich, Switzerland

Koehler, Katja
论文数: 0 引用数: 0
h-index: 0
机构: ETH Honggerberg, Inst Mol Syst Biol, Swiss Fed Inst Technol, CH-8093 Zurich, Switzerland

Schrimpf, Sabine
论文数: 0 引用数: 0
h-index: 0
机构: ETH Honggerberg, Inst Mol Syst Biol, Swiss Fed Inst Technol, CH-8093 Zurich, Switzerland

Krijgsveld, Jeroen
论文数: 0 引用数: 0
h-index: 0
机构: ETH Honggerberg, Inst Mol Syst Biol, Swiss Fed Inst Technol, CH-8093 Zurich, Switzerland

Kregenow, Floyd
论文数: 0 引用数: 0
h-index: 0
机构: ETH Honggerberg, Inst Mol Syst Biol, Swiss Fed Inst Technol, CH-8093 Zurich, Switzerland

Heck, Albert J. R.
论文数: 0 引用数: 0
h-index: 0
机构: ETH Honggerberg, Inst Mol Syst Biol, Swiss Fed Inst Technol, CH-8093 Zurich, Switzerland

Hafen, Ernst
论文数: 0 引用数: 0
h-index: 0
机构: ETH Honggerberg, Inst Mol Syst Biol, Swiss Fed Inst Technol, CH-8093 Zurich, Switzerland

Schlapbach, Ralph
论文数: 0 引用数: 0
h-index: 0
机构: ETH Honggerberg, Inst Mol Syst Biol, Swiss Fed Inst Technol, CH-8093 Zurich, Switzerland

Aebersold, Ruedi
论文数: 0 引用数: 0
h-index: 0
机构: ETH Honggerberg, Inst Mol Syst Biol, Swiss Fed Inst Technol, CH-8093 Zurich, Switzerland
[4]
The need for guidelines in publication of peptide and protein identification data - Working group on publication guidelines for peptide and protein identification data
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Carr, S
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Aebersold, R
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Baldwin, M
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Burlingame, A
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Nesvizhskii, A
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MOLECULAR & CELLULAR PROTEOMICS,
2004, 3 (06)
:531-533

Carr, S
论文数: 0 引用数: 0
h-index: 0
机构: Broad Inst, Cambridge, MA 02139 USA

Aebersold, R
论文数: 0 引用数: 0
h-index: 0
机构: Broad Inst, Cambridge, MA 02139 USA

Baldwin, M
论文数: 0 引用数: 0
h-index: 0
机构: Broad Inst, Cambridge, MA 02139 USA

Burlingame, A
论文数: 0 引用数: 0
h-index: 0
机构: Broad Inst, Cambridge, MA 02139 USA

Clauser, K
论文数: 0 引用数: 0
h-index: 0
机构: Broad Inst, Cambridge, MA 02139 USA

Nesvizhskii, A
论文数: 0 引用数: 0
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机构: Broad Inst, Cambridge, MA 02139 USA
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Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast
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de Godoy, Lyris M. F.
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Olsen, Jesper V.
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Cox, Juergen
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Walther, Tobias C.
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Mann, Matthias
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NATURE,
2008, 455 (7217)
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de Godoy, Lyris M. F.
论文数: 0 引用数: 0
h-index: 0
机构:
Max Planck Inst Biochem, D-82152 Martinsried, Germany Max Planck Inst Biochem, D-82152 Martinsried, Germany

Olsen, Jesper V.
论文数: 0 引用数: 0
h-index: 0
机构:
Max Planck Inst Biochem, D-82152 Martinsried, Germany Max Planck Inst Biochem, D-82152 Martinsried, Germany

Cox, Juergen
论文数: 0 引用数: 0
h-index: 0
机构:
Max Planck Inst Biochem, D-82152 Martinsried, Germany Max Planck Inst Biochem, D-82152 Martinsried, Germany

Nielsen, Michael L.
论文数: 0 引用数: 0
h-index: 0
机构:
Max Planck Inst Biochem, D-82152 Martinsried, Germany Max Planck Inst Biochem, D-82152 Martinsried, Germany

Hubner, Nina C.
论文数: 0 引用数: 0
h-index: 0
机构:
Max Planck Inst Biochem, D-82152 Martinsried, Germany Max Planck Inst Biochem, D-82152 Martinsried, Germany

Froehlich, Florian
论文数: 0 引用数: 0
h-index: 0
机构:
Max Planck Inst Biochem, D-82152 Martinsried, Germany Max Planck Inst Biochem, D-82152 Martinsried, Germany

Walther, Tobias C.
论文数: 0 引用数: 0
h-index: 0
机构:
Max Planck Inst Biochem, D-82152 Martinsried, Germany Max Planck Inst Biochem, D-82152 Martinsried, Germany

Mann, Matthias
论文数: 0 引用数: 0
h-index: 0
机构:
Max Planck Inst Biochem, D-82152 Martinsried, Germany Max Planck Inst Biochem, D-82152 Martinsried, Germany
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2007, 4 (03)
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Elias, Joshua E.
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h-index: 0
机构: Harvard Univ, Sch Med, Dept Cell Biol, Boston, MA 02115 USA

Gygi, Steven P.
论文数: 0 引用数: 0
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机构: Harvard Univ, Sch Med, Dept Cell Biol, Boston, MA 02115 USA
[7]
Deterministic protein inference for shotgun proteomics data provides new insights into Arabidopsis pollen development and function
[J].
Grobei, Monica A.
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Qeli, Ermir
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Brunner, Erich
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Rehrauer, Hubert
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GENOME RESEARCH,
2009, 19 (10)
:1786-1800

Grobei, Monica A.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Zurich, Ctr Model Organism Proteomes, CH-8057 Zurich, Switzerland
Univ Zurich, Inst Plant Biol, CH-8008 Zurich, Switzerland
Univ Zurich, Zurich Basel Plant Sci Ctr, CH-8008 Zurich, Switzerland Univ Zurich, Ctr Model Organism Proteomes, CH-8057 Zurich, Switzerland

论文数: 引用数:
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机构:

Brunner, Erich
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Zurich, Ctr Model Organism Proteomes, CH-8057 Zurich, Switzerland Univ Zurich, Ctr Model Organism Proteomes, CH-8057 Zurich, Switzerland

Rehrauer, Hubert
论文数: 0 引用数: 0
h-index: 0
机构:
ETH, Funct Genom Ctr Zurich, CH-8057 Zurich, Switzerland Univ Zurich, Ctr Model Organism Proteomes, CH-8057 Zurich, Switzerland

Zhang, Runxuan
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Zurich, Ctr Model Organism Proteomes, CH-8057 Zurich, Switzerland Univ Zurich, Ctr Model Organism Proteomes, CH-8057 Zurich, Switzerland

Roschitzki, Bernd
论文数: 0 引用数: 0
h-index: 0
机构:
ETH, Funct Genom Ctr Zurich, CH-8057 Zurich, Switzerland Univ Zurich, Ctr Model Organism Proteomes, CH-8057 Zurich, Switzerland

Basler, Konrad
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Zurich, Ctr Model Organism Proteomes, CH-8057 Zurich, Switzerland
Univ Zurich, Inst Mol Biol, CH-8057 Zurich, Switzerland Univ Zurich, Ctr Model Organism Proteomes, CH-8057 Zurich, Switzerland

Ahrens, Christian H.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Zurich, Ctr Model Organism Proteomes, CH-8057 Zurich, Switzerland Univ Zurich, Ctr Model Organism Proteomes, CH-8057 Zurich, Switzerland

Grossniklaus, Ueli
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Zurich, Ctr Model Organism Proteomes, CH-8057 Zurich, Switzerland
Univ Zurich, Inst Plant Biol, CH-8008 Zurich, Switzerland
Univ Zurich, Zurich Basel Plant Sci Ctr, CH-8008 Zurich, Switzerland Univ Zurich, Ctr Model Organism Proteomes, CH-8057 Zurich, Switzerland
[8]
False Discovery Rates of Protein Identifications: A Strike against the Two-Peptide Rule
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Gupta, Nitin
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2009, 8 (09)
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Gupta, Nitin
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h-index: 0
机构:
Univ Calif San Diego, Bioinformat Program, La Jolla, CA 92093 USA Univ Calif San Diego, Bioinformat Program, La Jolla, CA 92093 USA

Pevzner, Pavel A.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Calif San Diego, Dept Comp Sci, La Jolla, CA 92093 USA Univ Calif San Diego, Bioinformat Program, La Jolla, CA 92093 USA
[9]
IDPicker 2.0: Improved Protein Assembly with High Discrimination Peptide Identification Filtering
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Ma, Ze-Qiang
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Dasari, Surendra
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Chambers, Matthew C.
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Sobecki, Scott M.
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Zimmerman, Lisa J.
;
Halvey, Patrick J.
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Schilling, Birgit
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Drake, Penelope M.
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Gibson, Bradford W.
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Tabb, David L.
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JOURNAL OF PROTEOME RESEARCH,
2009, 8 (08)
:3872-3881

Ma, Ze-Qiang
论文数: 0 引用数: 0
h-index: 0
机构:
Vanderbilt Univ, Med Ctr, Dept Biomed Informat, Nashville, TN 37232 USA Vanderbilt Univ, Med Ctr, Dept Biomed Informat, Nashville, TN 37232 USA

Dasari, Surendra
论文数: 0 引用数: 0
h-index: 0
机构:
Vanderbilt Univ, Med Ctr, Dept Biomed Informat, Nashville, TN 37232 USA Vanderbilt Univ, Med Ctr, Dept Biomed Informat, Nashville, TN 37232 USA

Chambers, Matthew C.
论文数: 0 引用数: 0
h-index: 0
机构:
Vanderbilt Univ, Med Ctr, Dept Biomed Informat, Nashville, TN 37232 USA Vanderbilt Univ, Med Ctr, Dept Biomed Informat, Nashville, TN 37232 USA

Litton, Michael D.
论文数: 0 引用数: 0
h-index: 0
机构:
Vanderbilt Ingram Canc Ctr, Jim Ayers Inst Precanc Detect & Diag, Nashville, TN 37232 USA Vanderbilt Univ, Med Ctr, Dept Biomed Informat, Nashville, TN 37232 USA

Sobecki, Scott M.
论文数: 0 引用数: 0
h-index: 0
机构:
Vanderbilt Univ, Med Ctr, Mass Spectrometry Res Ctr, Nashville, TN 37232 USA Vanderbilt Univ, Med Ctr, Dept Biomed Informat, Nashville, TN 37232 USA

Zimmerman, Lisa J.
论文数: 0 引用数: 0
h-index: 0
机构:
Vanderbilt Ingram Canc Ctr, Jim Ayers Inst Precanc Detect & Diag, Nashville, TN 37232 USA
Vanderbilt Univ, Med Ctr, Dept Biochem, Nashville, TN 37232 USA Vanderbilt Univ, Med Ctr, Dept Biomed Informat, Nashville, TN 37232 USA

Halvey, Patrick J.
论文数: 0 引用数: 0
h-index: 0
机构:
Vanderbilt Ingram Canc Ctr, Jim Ayers Inst Precanc Detect & Diag, Nashville, TN 37232 USA
Vanderbilt Univ, Med Ctr, Dept Biochem, Nashville, TN 37232 USA Vanderbilt Univ, Med Ctr, Dept Biomed Informat, Nashville, TN 37232 USA

Schilling, Birgit
论文数: 0 引用数: 0
h-index: 0
机构:
Buck Inst Age Res, Novato, CA 94945 USA Vanderbilt Univ, Med Ctr, Dept Biomed Informat, Nashville, TN 37232 USA

Drake, Penelope M.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Calif San Francisco, Dept Obstet Gynecol & Reprod Sci, San Francisco, CA 94143 USA
Univ Calif San Francisco, UCSF Sandler Moore Mass Spectrometry Core Facil, San Francisco, CA 94143 USA Vanderbilt Univ, Med Ctr, Dept Biomed Informat, Nashville, TN 37232 USA

Gibson, Bradford W.
论文数: 0 引用数: 0
h-index: 0
机构:
Buck Inst Age Res, Novato, CA 94945 USA
Univ Calif San Francisco, Dept Pharmaceut Chem, San Francisco, CA 94143 USA Vanderbilt Univ, Med Ctr, Dept Biomed Informat, Nashville, TN 37232 USA

Tabb, David L.
论文数: 0 引用数: 0
h-index: 0
机构:
Vanderbilt Univ, Med Ctr, Dept Biomed Informat, Nashville, TN 37232 USA
Vanderbilt Ingram Canc Ctr, Jim Ayers Inst Precanc Detect & Diag, Nashville, TN 37232 USA
Vanderbilt Univ, Med Ctr, Mass Spectrometry Res Ctr, Nashville, TN 37232 USA
Vanderbilt Univ, Med Ctr, Dept Biochem, Nashville, TN 37232 USA Vanderbilt Univ, Med Ctr, Dept Biomed Informat, Nashville, TN 37232 USA
[10]
Interpretation of shotgun proteomic data - The protein inference problem
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Nesvizhskii, AI
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Aebersold, R
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MOLECULAR & CELLULAR PROTEOMICS,
2005, 4 (10)
:1419-1440

Nesvizhskii, AI
论文数: 0 引用数: 0
h-index: 0
机构: Inst Syst Biol, Seattle, WA 98103 USA

Aebersold, R
论文数: 0 引用数: 0
h-index: 0
机构: Inst Syst Biol, Seattle, WA 98103 USA