Maximum-likelihood crystallization

被引:32
作者
Rupp, B [1 ]
机构
[1] Lawrence Livermore Natl Lab, Macromol Crystallog & TB Struct Genom Consortium, Livermore, CA 94551 USA
关键词
high-throughput crystallization; statistical analysis; crystallization screening; structural genomics; predictive models;
D O I
10.1016/S1047-8477(03)00047-9
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The crystallization facility of the TB Structural Genomics Consortium, one of nine NIH-sponsored structural genomics pilot projects, employs a combinatorial random sampling technique in high-throughput crystallization screening. Although data are still sparse and a comprehensive analysis cannot be performed at this stage, preliminary results appear to validate the random-screening concept. A discussion of statistical crystallization data analysis aims to draw attention to the need for comprehensive and valid sampling protocols. In view of limited overlap in techniques and sampling parameters between the publicly funded high-throughput crystallography initiatives, exchange of information should be encouraged, aiming to effectively integrate data mining efforts into a comprehensive predictive framework for protein crystallization. (C) 2003 Elsevier Science (USA). All rights reserved.
引用
收藏
页码:162 / 169
页数:8
相关论文
共 35 条
[11]   Protein production: feeding the crystallographers and NMR spectroscopists [J].
Edwards, AM ;
Arrowsmith, CH ;
Christendat, D ;
Dharamsi, A ;
Friesen, JD ;
Greenblatt, JF ;
Vedadi, M .
NATURE STRUCTURAL BIOLOGY, 2000, 7 (Suppl 11) :970-972
[12]   Re-clustering the database for crystallization of macromolecules [J].
Farr, RG ;
Perryman, AL ;
Samudzi, CT .
JOURNAL OF CRYSTAL GROWTH, 1998, 183 (04) :653-668
[13]   BIOLOGICAL MACROMOLECULE CRYSTALLIZATION DATABASE, VERSION-3.0 - NEW FEATURES, DATA AND THE NASA ARCHIVE FOR PROTEIN CRYSTAL-GROWTH DATA [J].
GILLILAND, GL ;
TUNG, M ;
BLAKESLEE, DM ;
LADNER, JE .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1994, 50 :408-413
[14]  
Goulding Celia W., 2002, Current Drug Targets - Infectious Disorders, V2, P121, DOI 10.2174/1568005023342551
[15]   A robust and scalable microfluidic metering method that allows protein crystal growth by free interface diffusion [J].
Hansen, CL ;
Skordalakes, E ;
Berger, JM ;
Quake, SR .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2002, 99 (26) :16531-16536
[16]  
Hastie T, 2008, The elements of statistical learning, Vsecond, DOI DOI 10.1007/978-0-387-21606-5
[17]   Statistical methods for the objective design of screening procedures for macromolecular crystallization [J].
Hennessy, D ;
Buchanan, B ;
Subramanian, D ;
Wilkosz, PA ;
Rosenberg, JM .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 2000, 56 :817-827
[18]   SPARSE-MATRIX SAMPLING - A SCREENING METHOD FOR CRYSTALLIZATION OF PROTEINS [J].
JANCARIK, J ;
KIM, SH .
JOURNAL OF APPLIED CRYSTALLOGRAPHY, 1991, 24 :409-411
[19]   Intelligent decision support for protein crystal growth [J].
Jurisica, I ;
Rogers, P ;
Glasgow, JI ;
Fortier, S ;
Luft, JR ;
Wolfley, JR ;
Bianca, MA ;
Weeks, DR ;
DeTitta, GT .
IBM SYSTEMS JOURNAL, 2001, 40 (02) :394-409
[20]   The high-speed Hydra-Plus-One system for automated high-throughput protein crystallography [J].
Krupka, HI ;
Rupp, B ;
Segelke, BW ;
Lekin, TP ;
Wright, D ;
Wu, HC ;
Todd, P ;
Azarani, A .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 2002, 58 :1523-1526