Unraveling plant-microbe interactions: can multi-species transcriptomics help?

被引：102

作者：

Schenk, Peer M. ^{[1
]}

Carvalhais, Lilia C. ^{[1
]}

Kazan, Kemal ^{[2
]}

机构：

[1] Univ Queensland, Sch Agr & Food Sci, Brisbane, Qld 4072, Australia

[2] CSIRO Plant Ind, Queensland Biosci Precinct, St Lucia, Qld 4067, Australia

来源：

TRENDS IN BIOTECHNOLOGY | 2012年 / 30卷 / 03期

基金：

澳大利亚研究理事会;

关键词：

INDUCED SYSTEMIC RESISTANCE; ANALYSIS REVEALS; ARABIDOPSIS-THALIANA; METABOLITE ANALYSIS; GROWTH PROMOTION; GENE-EXPRESSION; SOIL; RESPONSES; PATHOGEN; MICROARRAY;

D O I：

10.1016/j.tibtech.2011.11.002

中图分类号：

Q81 [生物工程学（生物技术）]; Q93 [微生物学];

学科分类号：

071005 ; 0836 ; 090102 ; 100705 ;

摘要：

Plants in their natural habitats are surrounded by a large number of microorganisms. Some microbes directly interact with plants in a mutually beneficial manner whereas others colonize the plant only for their own benefit. In addition, microbes can indirectly affect plants by drastically altering their environments. Understanding the complex nature of plant-microbe interactions can potentially offer new strategies to enhance plant productivity in an environmentally friendly manner. As briefly reviewed here, the emerging area of multi-species transcriptomics holds the promise to provide knowledge on how this can be achieved. We discuss key aspects of how transcriptome analysis can be used to provide a more comprehensive picture of the complex interactions of plants with their biotic and abiotic environments.

引用

页码：177 / 184

页数：8

共 94 条

[41] Sampling, defining, characterising and modeling the rhizosphere-the soil science tool box [J].

Luster, Joerg ;

Goettlein, Axel ;

Nowack, Bernd ;

Sarret, Geraldine .

PLANT AND SOIL, 2009, 321 (1-2) :457-482

[42] Transcriptome profiling of bacterial responses to root exudates identifies genes involved in microbe-plant interactions [J].

Mark, GL ;

Dow, JM ;

Kiely, PD ;

Higgins, H ;

Haynes, J ;

Baysse, C ;

Abbas, A ;

Foley, T ;

Franks, A ;

Morrissey, J ;

O'Gara, F .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2005, 102 (48) :17454-17459

[43] Spatial and temporal dynamics of the microbial community structure in the rhizosphere of cluster roots of white lupin (Lupinus albus L.) [J].

Marschner, P ;

Neumann, G ;

Kania, A ;

Weiskopf, L ;

Lieberei, R .

PLANT AND SOIL, 2002, 246 (02) :167-174

[44] From Galactic archeology to soil metagenomics - surfing on massive data streams [J].

Martin, Nicolas F. ;

Martin, Francis .

NEW PHYTOLOGIST, 2010, 185 (02) :343-348

[45] Soil fungal isolates produce different organic acid patterns involved in phosphate salts solubilization [J].

Martin Scervino, Jose ;

Prieto Mesa, Milton ;

Della Monica, Ivana ;

Recchi, Marina ;

Sarmiento Moreno, Nubia ;

Godeas, Alicia .

BIOLOGY AND FERTILITY OF SOILS, 2010, 46 (07) :755-763

[46] Genomic analysis reveals the major driving forces of bacterial life in the rhizosphere [J].

Matilla, Miguel A. ;

Espinosa-Urgel, Manuel ;

Rodriguez-Herva, Jose J. ;

Ramos, Juan L. ;

Ramos-Gonzalez, Maria Isabel .

GENOME BIOLOGY, 2007, 8 (09)

[47] Pseudomonas putida KT2440 causes induced systemic resistance and changes in Arabidopsis root exudation [J].

Matilla, Miguel A. ;

Ramos, Juan L. ;

Bakker, Peter A. H. M. ;

Doornbos, Rogier ;

Badri, Dayakar V. ;

Vivanco, Jorge M. ;

Isabel Ramos-Gonzalez, Maria .

ENVIRONMENTAL MICROBIOLOGY REPORTS, 2010, 2 (03) :381-388

[48] Assessing affymetrix GeneChip microarray quality [J].

McCall, Matthew N. ;

Murakami, Peter N. ;

Lukk, Margus ;

Huber, Wolfgang ;

Irizarry, Rafael A. .

BMC BIOINFORMATICS, 2011, 12

[49] Fusarium wilt (Fusarium oxysporum f. sp vasinfectum) genes expressed during infection of cotton (Gossypium hirsutum) [J].

McFadden, HG ;

Wilson, IW ;

Chapple, RM ;

Dowd, C .

MOLECULAR PLANT PATHOLOGY, 2006, 7 (02) :87-101

[50] Development of an Environmental Functional Gene Microarray for Soil Microbial Communities [J].

McGrath, Ken C. ;

Mondav, Rhiannon ;

Sintrajaya, Regina ;

Slattery, Bill ;

Schmidt, Susanne ;

Schenk, Peer M. .

APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2010, 76 (21) :7161-7170

← 1 2 3 4 5 6 7 8 9 10 →