BioMart: driving a paradigm change in biological data management

被引:188
作者
Kasprzyk, Arek [1 ]
机构
[1] MaRS Ctr, Ontario Inst Canc Res, Toronto, ON M5G 0A3, Canada
来源
DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION | 2011年
关键词
ACCESS;
D O I
10.1093/database/bar049
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
引用
收藏
页数:3
相关论文
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