Syntheses of 5-Formyl- and 5-Carboxyl-dC Containing DNA Oligos as Potential Oxidation Products of 5-Hydroxymethylcytosine in DNA

被引:33
作者
Dai, Qing [1 ]
He, Chuan
机构
[1] Univ Chicago, Dept Chem, Chicago, IL 60637 USA
关键词
CONVERSION;
D O I
10.1021/ol201189n
中图分类号
O62 [有机化学];
学科分类号
070303 ; 081704 ;
摘要
To investigate the potential oxidation products of 5-hydroxymethylcytosine (5-hmC)-containing DNA, we present here efficient syntheses of 5-formyl- and 5-methoxycarbonyl-2'-deoxycytidine phosphoramidites. The 5-formyl group in III was easy to introduce and was compatible with phosphoramidite and DNA syntheses. An additional treatment of ODN1 with NaBH4 produced the corresponding ODN2 quantitatively. Phosphoramidite V was also incorporated into DNA, and the methyl ester could be hydrolyzed under mild basic conditions to afford ODN3.
引用
收藏
页码:3446 / 3449
页数:4
相关论文
共 19 条
[1]   Synthesis of 5-methylamino-2′-deoxyuridine derivatives [J].
Catalanotti, B ;
Galeone, A ;
Mayol, L ;
Oliviero, G ;
Rigano, D ;
Varra, N .
NUCLEOSIDES NUCLEOTIDES & NUCLEIC ACIDS, 2001, 20 (10-11) :1831-1841
[2]   Syntheses of Two 5-Hydroxymethyl-2′-deoxycytidine Phosphoramidites with TBDMS as the 5-Hydroxymethyl Protecting Group and Their Incorporation into DNA [J].
Dai, Qing ;
Song, Chun-Xiao ;
Pan, Tao ;
He, Chuan .
JOURNAL OF ORGANIC CHEMISTRY, 2011, 76 (10) :4182-4188
[3]   Epigenetic Reprogramming in Plant and Animal Development [J].
Feng, Suhua ;
Jacobsen, Steven E. ;
Reik, Wolf .
SCIENCE, 2010, 330 (6004) :622-627
[4]   OXIDATION OF NUCLEIC-ACID RELATED-COMPOUNDS BY THE PEROXODISULFATE ION [J].
ITAHARA, T ;
YOSHITAKE, T ;
KOGA, S ;
NISHINO, A .
BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN, 1994, 67 (08) :2257-2264
[6]   Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specification [J].
Ito, Shinsuke ;
D'Alessio, Ana C. ;
Taranova, Olena V. ;
Hong, Kwonho ;
Sowers, Lawrence C. ;
Zhang, Yi .
NATURE, 2010, 466 (7310) :1129-U151
[7]   Synthesis and properties of oligonucleotides containing 5-formyl-2′-deoxycytidine:: in vitro DNA polymerase reactions on DNA templates containing 5-formyl-2′-deoxycytidine [J].
Karino, N ;
Ueno, Y ;
Matsuda, A .
NUCLEIC ACIDS RESEARCH, 2001, 29 (12) :2456-2463
[8]   The Nuclear DNA Base 5-Hydroxymethylcytosine Is Present in Purkinje Neurons and the Brain [J].
Kriaucionis, Skirmantas ;
Heintz, Nathaniel .
SCIENCE, 2009, 324 (5929) :929-930
[9]   Synthesis and investigation of the 5-formylcytidine modified, anticodon stem and loop of the human mitochondrial tRNAMet [J].
Lusic, Hrvoje ;
Gustilo, Estella M. ;
Vendeix, Franck A. P. ;
Kaiser, Rob ;
Delaney, Michael O. ;
Graham, William D. ;
Moye, Virginia A. ;
Cantara, William A. ;
Agris, Paul F. ;
Deiters, Alexander .
NUCLEIC ACIDS RESEARCH, 2008, 36 (20) :6548-6557
[10]   Efficient Synthesis of 5-Hydroxymethylcytosine Containing DNA [J].
Muenzel, Martin ;
Globisch, Daniel ;
Trindler, Christian ;
Carell, Thomas .
ORGANIC LETTERS, 2010, 12 (24) :5671-5673