Stem-Loop RT-PCR Quantification of siRNAs In Vitro and In Vivo

被引:39
作者
Cheng, Angie [1 ]
Li, Mu [1 ]
Liang, Yu [2 ]
Wang, Yu [2 ]
Wong, Linda [2 ]
Chen, Caifu [2 ]
Vlassov, Alexander V. [1 ]
Magdaleno, Susan [1 ]
机构
[1] Life Technol, Austin, TX 78744 USA
[2] Life Technol, Foster City, CA USA
关键词
GENE-EXPRESSION; DELIVERY; RNAI; DNA;
D O I
10.1089/oli.2008.0176
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
RNA interference (RNAi) is a mechanism in which the introduction of small interfering RNAs (siRNAs) into a diverse range of organisms and cell types causes degradation of the complementary mRNA. Applications of RNAi include gene function and pathway analysis, target identification and validation, and therapeutics. There is a need to develop reliable and easy-to-use assays to evaluate siRNA delivery efficiency and distribution, study pathways, and stability of siRNAs in cells (posttransfection) and in animals (postinjection). We have leveraged the Applied Biosystems TaqMan (R)-based stem-loop RT-PCR technology, originally developed for quantification of endogenous microRNAs in cells, to fulfill these needs. The application protocols developed enable robust quantification of siRNA, including chemically modified siRNA molecules, in vitro and in vivo.
引用
收藏
页码:203 / 208
页数:6
相关论文
共 21 条
[11]   Characterisation of membrane oligonucleotide-binding proteins and oligonucleotide uptake in keratinocytes [J].
Laktionov, PP ;
Dazard, JE ;
Vives, E ;
Rykova, EY ;
Piette, J ;
Vlassov, VV ;
Lebleu, B .
NUCLEIC ACIDS RESEARCH, 1999, 27 (11) :2315-2324
[12]   Efficient delivery of siRNA for inhibition of gene expression in postnatal mice [J].
Lewis, DL ;
Hagstrom, JE ;
Loomis, AG ;
Wolff, JA ;
Herweijer, H .
NATURE GENETICS, 2002, 32 (01) :107-108
[13]   Delivery of siRNA and siRNA expression constructs to adult mammals by hydrodynamic intravascular injection [J].
Lewis, DL ;
Wolff, JA .
RNA INTERFERENCE, 2005, 392 :336-+
[14]   Analysis of relative gene expression data using real-time quantitative PCR and the 2-ΔΔCT method [J].
Livak, KJ ;
Schmittgen, TD .
METHODS, 2001, 25 (04) :402-408
[15]   Quantitative detection of siRNA and single-stranded oligonucleotides:: relationship between uptake and biological activity of siRNA -: art. no. e170 [J].
Overhoff, M ;
Wünsche, W ;
Sczakiel, G .
NUCLEIC ACIDS RESEARCH, 2004, 32 (21) :e170
[16]   A PCR-based method for detection and quantification of small RNAs [J].
Ro, Seungil ;
Park, Chanjae ;
Jin, Jingling ;
Sanders, Kenton M. ;
Yan, Wei .
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 2006, 351 (03) :756-763
[17]   miR-Q: a novel quantitative RT-PCR approach for the expression profiling of small RNA molecules such as miRNAs in a complex sample [J].
Sharbati-Tehrani, Soroush ;
Kutz-Lohroff, Barbara ;
Bergbauer, Ramona ;
Scholven, Jutta ;
Einspanier, Ralf .
BMC MOLECULAR BIOLOGY, 2008, 9
[18]   Examination of real-time polymerase chain reaction methods for the detection and quantification of modified siRNA [J].
Stratford, Suzanne ;
Stec, Summer ;
Jadhav, Vasant ;
Seitzer, Jessica ;
Abrams, Marc ;
Beverly, Michael .
ANALYTICAL BIOCHEMISTRY, 2008, 379 (01) :96-104
[19]   Protocol: a highly sensitive RT-PCR method for detection and quantification of microRNAs [J].
Varkonyi-Gasic, Erika ;
Wu, Rongmei ;
Wood, Marion ;
Walton, Eric F. ;
Hellens, Roger P. .
PLANT METHODS, 2007, 3 (1)
[20]  
Vlassov AV, 1998, BIOCHEMISTRY-MOSCOW+, V63, P1349