BABELOMICS:: a systems biology perspective in the functional annotation of genome-scale experiments

被引：197

作者：

Al-Shahrour, Fatima

Minguez, Pablo

Tarraga, Joaquin

Montaner, David

Alloza, Eva

Vaquerizas, Juan M.

Conde, Lucia

Blaschke, Christian

Vera, Javier

Dopazo, Joaquin

机构：

[1] CIPF, Bioinformat Dept, E-46013 Valencia, Spain

[2] CIPF, Funct Genom Node, INB, E-46013 Valencia, Spain

[3] Bioalma, E-28760 Madrid, Spain

[4] INB, BSC, E-08034 Barcelona, Spain

来源：

NUCLEIC ACIDS RESEARCH | 2006年 / 34卷

关键词：

D O I：

10.1093/nar/gkl172

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

We present a new version of Babelomics, a complete suite of web tools for functional analysis of genome- scale experiments, with new and improved tools. New functionally relevant terms have been included such as CisRed motifs or bioentities obtained by text- mining procedures. An improved indexing has considerably speeded up several of the modules. An improved version of the FatiScan method for studying the coordinate behaviour of groups of functionally related genes is presented, along with a similar tool, the Gene Set Enrichment Analysis. Babelomics is now more oriented to test systems biology inspired hypotheses. Babelomics can be found at http://www.babelomics.org.

引用

页码：W472 / W476

页数：5

共 34 条

[1] BABELOMICS: a suite of web tools for functional annotation and analysis of groups of genes in high-throughput experiments [J].