Molecular robots guided by prescriptive landscapes

被引:733
作者
Lund, Kyle [2 ,3 ]
Manzo, Anthony J. [4 ]
Dabby, Nadine [5 ]
Michelotti, Nicole [4 ,6 ]
Johnson-Buck, Alexander [4 ]
Nangreave, Jeanette [2 ,3 ]
Taylor, Steven [1 ]
Pei, Renjun [1 ]
Stojanovic, Milan N. [1 ,7 ]
Walter, Nils G. [4 ]
Winfree, Erik [5 ]
Yan, Hao [2 ,3 ]
机构
[1] Columbia Univ, Dept Med, Div Expt Therapeut, New York, NY 10032 USA
[2] Arizona State Univ, Dept Chem & Biochem, Tempe, AZ 85287 USA
[3] Arizona State Univ, Biodesign Inst, Tempe, AZ 85287 USA
[4] Univ Michigan, Dept Chem, Single Mol Anal Grp, Ann Arbor, MI 48109 USA
[5] CALTECH, Pasadena, CA 91125 USA
[6] Univ Michigan, Dept Phys, Ann Arbor, MI 48109 USA
[7] Columbia Univ, Dept Biomed Engn, New York, NY 10032 USA
基金
美国国家卫生研究院; 美国国家科学基金会;
关键词
DNA; ENZYME; DEOXYRIBOZYME; COMPUTATION; DEVICES; MOTORS;
D O I
10.1038/nature09012
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Traditional robots(1) rely for their function on computing, to store internal representations of their goals and environment and to coordinate sensing and any actuation of components required in response. Moving robotics to the single-molecule level is possible in principle, but requires facing the limited ability of individual molecules to store complex information and programs. One strategy to overcome this problem is to use systems that can obtain complex behaviour from the interaction of simple robots with their environment(2-4). A first step in this direction was the development of DNA walkers(5), which have developed from being non-autonomous(6,7) to being capable of directed but brief motion on one-dimensional tracks(8-11). Here we demonstrate that previously developed random walkers(12)-so-called molecular spiders that comprise a streptavidin molecule as an inert 'body' and three deoxyribozymes as catalytic 'legs'-show elementary robotic behaviour when interacting with a precisely defined environment. Single-molecule microscopy observations confirm that such walkers achieve directional movement by sensing and modifying tracks of substrate molecules laid out on a two-dimensional DNA origami landscape(13). When using appropriately designed DNA origami, the molecular spiders autonomously carry out sequences of actions such as 'start', 'follow', 'turn' and 'stop'. We anticipate that this strategy will result in more complex robotic behaviour at the molecular level if additional control mechanisms are incorporated. One example might be interactions between multiple molecular robots leading to collective behaviour(14,15); another might be the ability to read and transform secondary cues on the DNA origami landscape as a means of implementing Turing-universal algorithmic behaviour(2,16,17).
引用
收藏
页码:206 / 210
页数:5
相关论文
共 30 条
[21]   A precisely controlled DNA biped walking device [J].
Sherman, WB ;
Seeman, NC .
NANO LETTERS, 2004, 4 (07) :1203-1207
[22]   A synthetic DNA walker for molecular transport [J].
Shin, JS ;
Pierce, NA .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2004, 126 (35) :10834-10835
[23]   A deoxyribozyme-based molecular automaton [J].
Stojanovic, MN ;
Stefanovic, D .
NATURE BIOTECHNOLOGY, 2003, 21 (09) :1069-1074
[24]   Molecular devices - A DNAzyme that walks processively and autonomously along a one-dimensional track [J].
Tian, Y ;
He, Y ;
Chen, Y ;
Yin, P ;
Mao, CD .
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 2005, 44 (28) :4355-4358
[25]  
Turing AM, 1937, P LOND MATH SOC, V42, P230, DOI 10.1112/plms/s2-42.1.230
[26]  
v Braitenberg V., 1984, Vehicles: Experiments in synthetic psychology
[27]   Do-it-yourself guide: how to use the modern single-molecule toolkit [J].
Walter, Nils G. ;
Huang, Cheng-Yen ;
Manzo, Anthony J. ;
Sobhy, Mohamed A. .
NATURE METHODS, 2008, 5 (06) :475-489
[28]   Fluorescence imaging with one manometer accuracy: Application to molecular motors [J].
Yildiz, A ;
Selvin, PR .
ACCOUNTS OF CHEMICAL RESEARCH, 2005, 38 (07) :574-582
[29]   Programming biomolecular self-assembly pathways [J].
Yin, Peng ;
Choi, Harry M. T. ;
Calvert, Colby R. ;
Pierce, Niles A. .
NATURE, 2008, 451 (7176) :318-U4
[30]   A DNA-fuelled molecular machine made of DNA [J].
Yurke, B ;
Turberfield, AJ ;
Mills, AP ;
Simmel, FC ;
Neumann, JL .
NATURE, 2000, 406 (6796) :605-608